This is a toy data set of a small amount of control and experimental data from a DNA Microarray . The data file is comma-delimited. The data has been ln-transformed. The first row has a '#' so is considered a comment line. The data starts on the first line not beginning with a '#'. There is one label column, and then there are four control columns and then four experimental columns.
This performs a two-sample t-test using the Bayes-regularized variance estimates. No normalization is performed. PPDE analysis and multiple hypothesis testing correction are performed on the p-values.
This is equivalent to a standard t-test using empirical variances. No normalization is performed. PPDE analysis and multiple hypothesis testing correction are performed on the p-values.