Basic file input parameters

This is a toy data set of a small amount of three condition data. The data file is comma-delimited. The data has been ln-transformed, so no normalization is needed. There is one comment line (beginning with '#') at the top, but then no header row besides. There is one label column, followed by three columns for condition 1, then three columns for condition 2, and finally two columns for condition 3.

Delimiter: Commas
Row Start: 1
Number of label columns: 1
Data columns for each condition: 3 3 2

Bayes-regularized Analysis Parameters

This performs a one-way ANOVA using the Bayes-regularized variance estimates. No normalization is performed. PPDE analysis and multiple hypothesis testing correction are performed on the p-values. TukeyHSD pairwise post-hoc tests are performed between each condition using the Bayes-regularized variance estimates.

Normalization: None
Bayes Sliding Window: 101
Bayes Confidence: 6
Run Pairwise Post-hoc: checked
Pairwise Post-hoc Type: TukeyHSD
Run PPDE: checked
Run Multiple Hypothesis Testing Correction: checked

Non Bayes-regularized Analysis Parameters

This is equivalent to a standard one-way ANOVA using empirical variances. No normalization is performed. PPDE analysis and multiple hypothesis testing correction are performed on the p-values. TukeyHSD pairwise post-hoc tests are performed between each condition using the empirical variances.

Normalization: None
Bayes Confidence: BLANK (Default)
Run Pairwise Post-hoc: checked
Pairwise Post-hoc Type: TukeyHSD
Run PPDE: checked
Run Multiple Hypothesis Testing Correction: checked